Index A | B | C | D | E | F | G | H | I | J | K | L | M | N | P | Q | R | S | T | U | V | W A add_to_group() (Module method) AffineTransform (class in jaxley.optimize.transforms) B Branch (class in jaxley.modules) branch() (Module method) branches (Module property) build_radiuses_from_xyzr() (in module jaxley.utils.cell_utils) C CaL (class in jaxley.channels.pospischil) CaT (class in jaxley.channels.pospischil) Cell (class in jaxley.modules) cell() (Module method) cells (Module property) ChainTransform (class in jaxley.optimize.transforms) Channel (class in jaxley.channels.channel) clamp() (Module method) comp() (Module method) Compartment (class in jaxley.modules) comps (Module property) compute_axial_conductances() (in module jaxley.utils.cell_utils) compute_children_and_parents() (in module jaxley.utils.cell_utils) compute_children_indices() (in module jaxley.utils.cell_utils) compute_compartment_centers() (Module method) compute_coupling_cond() (in module jaxley.utils.cell_utils) compute_coupling_cond_branchpoint() (in module jaxley.utils.cell_utils) compute_current() (CaL method) (CaT method) (K method) (Km method) (Leak method) (Na method) compute_impact_on_node() (in module jaxley.utils.cell_utils) compute_morphology_indices_in_levels() (in module jaxley.utils.cell_utils) compute_rotation_matrix() (in module jaxley.utils.plot_utils) compute_xyz() (Module method) connect() (in module jaxley.connect) connectivity_matrix_connect() (in module jaxley.connect) convert_point_process_to_distributed() (in module jaxley.utils.cell_utils) copy() (Module method) copy_node_property_to_edges() (Module method) create_cone_frustum_mesh() (in module jaxley.utils.plot_utils) create_cylinder_mesh() (in module jaxley.utils.plot_utils) create_sphere_mesh() (in module jaxley.utils.plot_utils) CustomTransform (class in jaxley.optimize.transforms) D data_clamp() (Module method) data_set() (Module method) data_stimulate() (Module method) delete_channel() (Module method) delete_clamps() (Module method) delete_recordings() (Module method) delete_stimuli() (Module method) delete_trainables() (Module method) distance() (Module method) E edge() (Module method) equal_segments() (in module jaxley.utils.cell_utils) extract_outline() (in module jaxley.utils.plot_utils) F forward() (ParamTransform method) fully_connect() (in module jaxley.connect) G gather_synapes() (in module jaxley.utils.syn_utils) get_num_neighbours() (in module jaxley.utils.cell_utils) get_parameters() (Module method) group_and_sum() (in module jaxley.utils.cell_utils) H HH (class in jaxley.channels.hh) I init() (TypeOptimizer method) init_state() (CaL method) (CaT method) (K method) (Km method) (Leak method) (Na method) initialized (Module property) insert() (Module method) integrate() (in module jaxley) interpolate_xyzr() (in module jaxley.utils.cell_utils) inverse() (ParamTransform method) IonotropicSynapse (class in jaxley.synapses) J jaxley.channels.pospischil module jaxley.optimize.optimizer module jaxley.optimize.transforms module jaxley.utils.cell_utils module jaxley.utils.jax_utils module jaxley.utils.plot_utils module jaxley.utils.syn_utils module K K (class in jaxley.channels.pospischil) Km (class in jaxley.channels.pospischil) L Leak (class in jaxley.channels.pospischil) linear_segments() (in module jaxley.utils.cell_utils) loc() (Module method) loc_of_index() (in module jaxley.utils.cell_utils) local_index_of_loc() (in module jaxley.utils.cell_utils) M make_trainable() (Module method) MaskedTransform (class in jaxley.optimize.transforms) merge_cells() (in module jaxley.utils.cell_utils) module jaxley.channels.pospischil jaxley.optimize.optimizer jaxley.optimize.transforms jaxley.utils.cell_utils jaxley.utils.jax_utils jaxley.utils.plot_utils jaxley.utils.syn_utils Module (class in jaxley.modules) move() (Module method) move_to() (Module method) N Na (class in jaxley.channels.pospischil) NegSoftplusTransform (class in jaxley.optimize.transforms) nested_checkpoint_scan() (in module jaxley.utils.jax_utils) Network (class in jaxley.modules) P params_to_pstate() (in module jaxley.utils.cell_utils) ParamTransform (class in jaxley.optimize.transforms) plot_comps() (in module jaxley.utils.plot_utils) plot_graph() (in module jaxley.utils.plot_utils) plot_mesh() (in module jaxley.utils.plot_utils) plot_morph() (in module jaxley.utils.plot_utils) Q query_channel_states_and_params() (in module jaxley.utils.cell_utils) R remap_to_consecutive() (in module jaxley.utils.cell_utils) rotate() (Module method) S scope() (Module method) select() (Module method) set() (Module method) set_ncomp() (Module method) set_scope() (Module method) shape (Module property) show() (Module method) SigmoidTransform (class in jaxley.optimize.transforms) SoftplusTransform (class in jaxley.optimize.transforms) sparse_connect() (in module jaxley.connect) stimulate() (Module method) Synapse (class in jaxley.synapses) T TanhRateSynapse (class in jaxley.synapses) tf_dict (ParamTransform attribute) Transform (class in jaxley.optimize.transforms) TypeOptimizer (class in jaxley.optimize.optimizer) U update() (TypeOptimizer method) update_states() (CaL method) (CaT method) (K method) (Km method) (Leak method) (Na method) V view (Module property) vis() (Module method) (Network method) W write_trainables() (Module method)
